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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV10237754 hCoV-19/dog/BosniaandHerzegovina/VFS-UNSA-LMGFI427/2021 EPI_ISL_6949572 RNA virus Severe acute respiratory syndrome coronavirus 2 Bosnia and Herzegovina 2021-03-02 Canis lupus familiaris 29767 2021-12-01 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Sarajevo, Veterinary Faculty, Laboratory for Molecular Diagnostic and Research Goletic S, Goletic T, Softic A, Sabic E, Jazic A, Terzic I, Nicevic M, Hodzic A University of Sarajevo, Veterinary Faculty, Laboratory for Molecular Diagnostic and Research 29767 100.00
OEAV3756686 SARS-CoV-2/Canis lupus familiaris/THA/CU27791/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OK539641 RNA viruses Severe acute respiratory syndrome coronavirus 2 Thailand 2021-09-14 Canis lupus familiaris 29704 2021-10-18 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Jairak,W., Chamsai,E., Udom,K., Charoenkul,K., Chaiyawong,S., Techakriengkrai,N., Tangwangvivat,R., Suwannakarn,K. and Amonsin,A. Veterinary Public Health, Faculty of Veterinary Science, Chulalongkorn University 29704 100.00
OEAV3786787 SARS-CoV-2/Dog/USA/GA-CDC-4213400-001/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OK174325 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-07-20 Canis lupus familiaris 29786 2021-09-17 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Kelleher,A., Tao,Y., Lynch,B., Uehara,A., Cook,P., Ng,H.J.J., Marine,R., Ahmad,A., Godino,C., Bunkley,P., Herzegh,O., Paden,C.R., Batra,D., Wang,H., Coalter,T., Padilla,J., Davis,M., Sheth,M., Nobles,S., Burroughs,M., Lee,J., Retchless,A. and Tong,S. RVB, CDC - Centers for Disease Control and Prevention 29390 98.67
OEAV3786788 SARS-CoV-2/Dog/USA/GA-CDC-4213401-001/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes OK174326 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-07-20 Canis lupus familiaris 29821 2021-09-17 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Kelleher,A., Tao,Y., Lynch,B., Uehara,A., Cook,P., Ng,H.J.J., Marine,R., Ahmad,A., Godino,C., Bunkley,P., Herzegh,O., Paden,C.R., Batra,D., Wang,H., Coalter,T., Padilla,J., Davis,M., Sheth,M., Nobles,S., Burroughs,M., Lee,J., Retchless,A. and Tong,S. RVB, CDC - Centers for Disease Control and Prevention 29821 100.00
OEAV7077756 hCoV-19/dog/Argentina/PAIS-A0642/2020 EPI_ISL_4344704 RNA virus Severe acute respiratory syndrome coronavirus 2 Argentina 2020-11-11 Canis lupus familiaris 29782 2021-09-20 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratorio Biología Molecular, Inmunología y Microbiología (LaBIM), Instituto Multidisciplinario de Salud, Tecnología y Desarrollo (IMSaTeD) UNSE-CONICET David Di Lullo, Francisco Lucatelli, María Gracia Iovane, Marcelo Ariel del Valle Ovejero, Pablo Santiago Yute, María Florencia Coronel, María Lorena Méndez, Fernando David Rivero, Nabaes Jodar, MS; Goya, S; Acuña, D; Natale, MI; Lusso, S; Valinotto, LE; Viegas, M. Área de Secuenciación del Laboratorio de Virología del Hospital de Niños Dr. Ricardo Gutierrez on behalf of 'Proyecto Argentino Interinstitucional de genomica de SARS-CoV-2' (PAIS Consortium) 27065 90.88
OEAV7077761 hCoV-19/dog/USA/GA-CDC-4213400-001/2021 EPI_ISL_4296308 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-20 Canis lupus familiaris 29786 2021-09-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Centers for Disease Control & Prevention Yan Li, Jing Zhang, Anna Kelleher, Ying Tao, Brian Lynch, Anna Uehara, Peter Cook, Han Jia Justin Ng, Rachel Marine, Ausaf Ahmad, Paige Bunkley, Claire Godino, Owen Herzegh, Clinton R. Paden, Dhwani Batra, Haibin Wang, Tara Coalter, Jasmine Padilla, Morgan Davis, Mili Sheth, Sarah Nobles, Mark Burroughs, Justin Lee, Adam Retchless, Suxiang Tong Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29390 98.67
OEAV7077762 hCoV-19/dog/USA/GA-CDC-4213401-001/2021 EPI_ISL_4296309 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-20 Canis lupus familiaris 29821 2021-09-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Centers for Disease Control & Prevention Yan Li, Jing Zhang, Anna Kelleher, Ying Tao, Brian Lynch, Anna Uehara, Peter Cook, Han Jia Justin Ng, Rachel Marine, Ausaf Ahmad, Paige Bunkley, Claire Godino, Owen Herzegh, Clinton R. Paden, Dhwani Batra, Haibin Wang, Tara Coalter, Jasmine Padilla, Morgan Davis, Mili Sheth, Sarah Nobles,  Mark Burroughs, Justin Lee, Adam Retchless, Suxiang Tong Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29821 100.00
OEAV7077763 hCoV-19/dog/USA/KS-8074/2021 EPI_ISL_4253995 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-07 Canis lupus familiaris 29781 2021-09-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Kansas State University Veterinary Health Center Lance Noll, Kelli Almes, Tyler Doerksen, Andrea Lu, Emily Cox, Don Harbidge, David Upchurch, Jianfa Bai, Jamie Henningson, Rachel Palinski Kansas State University Veterinary Diagnostic Laboratory 29769 99.96
OEAV8429354 hCoV-19/dog/BosniaandHerzegovina/VFS-UNSA-LMGFI057/2021 EPI_ISL_5194358 RNA virus Severe acute respiratory syndrome coronavirus 2 Bosnia and Herzegovina 2021-03-02 Canis lupus familiaris 29720 2021-10-15 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Sarajevo, Veterinary Faculty, Laboratory for Molecular Diagnostic and Research Laboratory Goletic S, Goletic T, Softic A, Terzic I., Sabic E., Hodzic A., Jazic A., Nicevic M. University of Sarajevo, Veterinary Faculty, Laboratory for Molecular Diagnostic and Research Laboratory 29287 98.54
OEAV8429355 hCoV-19/dog/Switzerland/TI-USZ_14_Tier1_Follow_up_1_Nase/2021 EPI_ISL_4549293 RNA virus Severe acute respiratory syndrome coronavirus 2 Switzerland 2021-06-03 Canis lupus familiaris 29826 2021-09-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Clinical Laboratory, Vetsuisse Faculty, University of Zurich Julia Klaus, Marina Luisa Meli, Regina Hofmann-Lehmann, Christian Beisel, Sarah Nadeau, Chaoran Chen, Ivan Topolsky, Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Katharina Jahn, Rebecca Denes, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Niko Beerenwinkel, Tanja Stadler Department of Biosystems Science and Engineering, ETH Zürich 23088 77.41
OEAV8809447 hCoV-19/dog/Thailand/CU27791/2021 EPI_ISL_5315539 RNA virus Severe acute respiratory syndrome coronavirus 2 Thailand 2021-09-14 Canis lupus familiaris 29704 2021-10-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Center of excellence for emerging and re-emerging diseases in animals. Faculty of Veterinary Science, Chulalongkorn University Waleemas Jairak, Ekkapat Chamsai, Kitikhun Udom, Kamonpan Charoenkul, Supassama Chaiyawong, Navapon Techakriengkrai, Ratanaporn Tangwangvivat, Kamol Suwannakarn, Alongkorn Amonsin Center of excellence for emerging and re-emerging diseases in animals. Faculty of Veterinary Science, Chulalongkorn University 29704 100.00
OEAV8809448 hCoV-19/dog/USA/GA-21-027601-001/2021 EPI_ISL_5781753 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-26 Canis lupus familiaris 29792 2021-10-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29792 100.00
OEAV8809449 hCoV-19/dog/USA/KS-21-026614-002/2021 EPI_ISL_5781751 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-07 Canis lupus familiaris 29862 2021-10-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Kansas State Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29862 100.00
OEAV8809450 hCoV-19/dog/USA/NJ-21-027164-001/2021 EPI_ISL_5781752 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-05 Canis lupus familiaris 29779 2021-10-30 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Antech Diagnostics Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29779 100.00
OEAV9003303 hCoV-19/USA/FL-21-022193-001/2021 EPI_ISL_5761526 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-26 Canis lupus familiaris 29774 2021-10-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Bronson Animal Disease Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29642 99.56
OEAV9003305 hCoV-19/USA/FL-21-025578-001/2021 EPI_ISL_5761517 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-18 Canis lupus familiaris 29826 2021-10-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29826 100.00
OEAV9003306 hCoV-19/USA/FL-21-025847-001/2021 EPI_ISL_5761515 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-25 Canis lupus familiaris 29800 2021-10-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Antech Diagnostics Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29800 100.00
OEAV9150722 hCoV-19/dog/USA/OH-21-031718-001/2021 EPI_ISL_6088012 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-01 Canis lupus familiaris 29790 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Ohio State University Infectious Diseases Institute Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29790 100.00
OEAV9150723 hCoV-19/dog/USA/VA-21-032400-003/2021 EPI_ISL_6088079 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-22 Canis lupus familiaris 29790 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29790 100.00
OEAV9712623 hCoV-19/Spain/CT-IrsiCaixaR026ND2E9/2021 EPI_ISL_6344510 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2021-07-26 Canis lupus familiaris 29804 2021-11-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IRTA-CReSA J.Rodon, L.Fernandez, J. Segalés, J. Vergara-Alert, Mariona Parera, Maria Casadellà, Francesc Catala-Moll, Roger Paredes, Bonaventura Clotet, Marc Noguera-Julian IrsiCaixa 28815 96.68
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